PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family AP2
Protein Properties Length: 436aa    MW: 47983.7 Da    PI: 6.9638
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721220genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.3e-17137186155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  676721220 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 186
                78*******************......55************************997 PP

2AP243.29.9e-14229279155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  676721220 229 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 279
                89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-9137186IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-16137195IPR016177DNA-binding domain
PROSITE profilePS5103217.596138194IPR001471AP2/ERF domain
CDDcd000182.06E-11138195No hitNo description
Gene3DG3DSA:3.30.730.104.5E-17138194IPR001471AP2/ERF domain
SMARTSM003801.2E-31138200IPR001471AP2/ERF domain
CDDcd000187.27E-26229289No hitNo description
PfamPF008472.7E-9229279IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-17229289IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-16230287IPR001471AP2/ERF domain
SMARTSM003804.5E-32230293IPR001471AP2/ERF domain
PROSITE profilePS5103215.672230287IPR001471AP2/ERF domain
PRINTSPR003674.8E-6231242IPR001471AP2/ERF domain
PRINTSPR003674.8E-6269289IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MWDLNDSPHQ TLREEESEEF SYSSPGKRVG SFSNSSSSAV VIEDGSDDDE PNRVRPNNPV  60
ITHQFFPEME SNVADDGGGG GGGPGPGFPR AHWFGVKFCQ SDLATGSSAG KPATVAAVVE  120
PAQPLKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA  180
AIKFRGVEAD INFNIEDYDD DLKQMTNLTK EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG  240
RWEARMGQFL GKKYVYLGLF DTEVEAARAY DKAAIKCNGK DAVTNFDPSI YDDELNAESS  300
GNPIQQDHNL DLSLGNSVNS KQKGQDMRLK MNQQESLHSN EILGLGQTGM ANHIPNSNHQ  360
FPGSSNIGSG GGFSLFPVAE NHRYDGRTTT NQVLANAAAS SGFSPHHHNQ IFNSTSASHQ  420
NWLQTNGFQP PLMRPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX0418870.0JX041887.1 Brassica juncea cultivar Varuna AP2 variant 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643409.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X3
RefseqXP_013643410.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X4
SwissprotP479270.0AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLT1QFV40.0T1QFV4_BRAJU; AP2 variant 1
STRINGBra011741.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.20.0AP2 family protein